Tools

• PPRD: Plant Public RNA-seq Database: a comprehensive online database for expression analysis of ~45 000 plant public RNA-Seq libraries
  • https://plantrnadb.com/
• ARS: A comprehensive online database for exploring ∼20,000 public Arabidopsis RNA-Seq libraries
  • https://plantrnadb.com/athrdb/
• shinyCircos V2: updating shinyCircos with more advanced features
  • https://github.com/YaoLab-Bioinfo/shinyCircos-V2.0
  • https://venyao.xyz/shinyCircos/
  • https://asiawang.shinyapps.io/shinyCircos/
    
• shinyCircos: an R/Shiny application for interactive creation of Circos plot
  • https://github.com/YaoLab-Bioinfo/shinyCircos
  • https://venyao.xyz/shinyCircos-V1/
  • https://yimingyu.shinyapps.io/shinycircos/
    
  • https://venyao.shinyapps.io/shinyCircos/
• shinyChromosome: an R/Shiny Application for Interactive Creation of Non-circular Plots of Whole Genomes
  • https://github.com/venyao/shinyChromosome
  • https://venyao.xyz/shinyChromosome
  • https://yimingyu.shinyapps.io/shinychromosome
    
  • https://venyao.shinyapps.io/shinyChromosome/